Protein Info for GFF3004 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 676 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF22422: MGH1-like_GH" amino acids 101 to 430 (330 residues), 275.4 bits, see alignment E=3.1e-85 PF01204: Trehalase" amino acids 219 to 277 (59 residues), 24.6 bits, see alignment 3.5e-09 PF03633: Glyco_hydro_65C" amino acids 447 to 507 (61 residues), 27.9 bits, see alignment 4.8e-10 PF00754: F5_F8_type_C" amino acids 547 to 660 (114 residues), 35.8 bits, see alignment E=2.4e-12 PF22633: F5_F8_type_C_2" amino acids 560 to 656 (97 residues), 40.9 bits, see alignment E=8.1e-14

Best Hits

KEGG orthology group: None (inferred from 62% identity to cak:Caul_3611)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (676 amino acids)

>GFF3004 hypothetical protein (Sphingobium sp. HT1-2)
MRAMRMLLLAGAAMIGMGAASPPPGSVGLDTHAIAVQRFGNDAPWYQDRIPFFESADPKI
DAVYYYRWQLYRGHQRDLGEEGYITTEFFDDVDWQRHPYASLNDATGFHLAEGRWLNDRR
FADDYIRFMYRGGNDRHFTDYMADSVWGRYLIDGDKAGVLEHLPVMRHIYRLWDEKFDFD
KGLYFVEPLLDATEYTVSSIDASGGKDGFRGGDAFRPSVNSYMYANARALAKMATMAGDT
EMTQEYEARAQALKDHVLADLWSEKLGHFIDRHQSRKNAHVKYWDPIRNRELVGYLPWMF
ELVPDEAKYAGAWAHLLDPASLAGKAGMRTVEANYEYYMRQYRYLGDAPECQWNGPIWPY
QTTQVLIAMANLLDHHSQQGPVTRSDYMRLLRQYTALHYQGNRLDLEEDYHPETGKPIVG
LDRSHHYFHSGYNDLILGGLVGIRPRADDVLEVNPLLPDAGDPQALAWFRAQDVPYHGHR
IAVTWDADGSHYGRGKGLSVEVDGKEVARRETLGRIELPVARVANAPVARPINRAVQLVR
SQFPMGSASSNADPENVHDAIDGRTWFFPELPNGWSSAPGEANQWYAIDLGKPVSIGRAE
LAFFADGKQFAVPQSYRLQAMVDGQWRDVATPKGAPLANGVTDLRFAGRAARQWRVLMRQ
PHGKAIRLAEIKLFDR