Protein Info for GFF3000 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: FIG017861: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 35 to 53 (19 residues), see Phobius details amino acids 58 to 76 (19 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 48% identity to dar:Daro_4172)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (220 amino acids)

>GFF3000 FIG017861: hypothetical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MTVSTLLRDLGVLLLMVAWVIAAHVGSSGWGNADFNAAVGVFPIAVAALMALWRLPQWLV
RGAGVLALGALLAWLWPRLRHNVALLYYIQHLGIHVALGVLFGKSLFGPGDALITRMARR
IFGPELSERKLRYTRGATLAWTLFFFANALVSTALFIWAPPAIWSIHANVLTGPLIGLMF
LGEHLVRLRVLPPHERPGLAAIRQAYQRESARRSADPPPP