Protein Info for GFF30 in Variovorax sp. SCN45

Annotation: Murein endolytic transglycosylase MltG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR00247: conserved hypothetical protein, YceG family" amino acids 19 to 328 (310 residues), 265.9 bits, see alignment E=2.5e-83 PF02618: YceG" amino acids 41 to 326 (286 residues), 278.2 bits, see alignment E=4e-87

Best Hits

KEGG orthology group: K07082, UPF0755 protein (inferred from 90% identity to vpe:Varpa_3104)

Predicted SEED Role

"FIG004453: protein YceG like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>GFF30 Murein endolytic transglycosylase MltG (Variovorax sp. SCN45)
VRSFFLTLFLLAALAALALGGAGLWWVHQPLKLPAPSVDLSVEPGTTPRGIAQAVADTGV
DVQPQLLYLWFRVSGQDRQMRAGSYELERGVTPKLLLNILVRGEEATRSVVLVEGWNIRQ
VRAALAKADQLKPDSVGLTDEALMTRLGRPGVHPEGRFFPDTYTYSKGSTDVALLQRAMR
AMDKKLEAAWAARASDLPLKSADEALILASIVEKETGKANDRAEIAAVFANRLRIGMPLQ
TDPTVIYGMGTAFDGNLRKKDLQTDTPWNTYTRGGLPPTPISMPGKAALLAAVQPAQSKS
LYFVSRGDGTSQFSNSLDDHNRAVNRYQRGGGDPKPKATQ