Protein Info for GFF2999 in Xanthobacter sp. DMC5

Annotation: Undecaprenyl-diphosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 transmembrane" amino acids 56 to 76 (21 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details amino acids 236 to 258 (23 residues), see Phobius details amino acids 269 to 289 (21 residues), see Phobius details TIGR00753: undecaprenyl-diphosphatase UppP" amino acids 21 to 276 (256 residues), 226.9 bits, see alignment E=1.7e-71 PF02673: BacA" amino acids 22 to 278 (257 residues), 246.5 bits, see alignment E=1.9e-77

Best Hits

Swiss-Prot: 64% identical to UPPP2_RHILO: Undecaprenyl-diphosphatase 2 (uppP2) from Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)

KEGG orthology group: K06153, undecaprenyl-diphosphatase [EC: 3.6.1.27] (inferred from 89% identity to xau:Xaut_3383)

Predicted SEED Role

"Undecaprenyl-diphosphatase (EC 3.6.1.27)" (EC 3.6.1.27)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.27

Use Curated BLAST to search for 3.6.1.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (290 amino acids)

>GFF2999 Undecaprenyl-diphosphatase (Xanthobacter sp. DMC5)
MASVCTSGVDTGFVALGTTKVAVLGVVQGITELLPISSTAHMRLVPALLGWPDPGSAFSA
AMQLAALFAVVTYFWSDLRALACGSISAVRAGDFSAHAPKTVLGIILGTIPIVIAGVLLK
SKLNACGSSFRDLWVIGAASLVMGLLLGIAEMTSRHTRTFAQIKLPDALVVGLAQVGALI
PGVSRSGSTLTAAMFLGLRREDAARFSFLLGLPAIFAAGVKELLELHHAGLDMQGWEVLG
VGLVTASLSAFVAIWTLMRVMERLSSWPFVFYRIGMGVFLLVAVWRGVLS