Protein Info for GFF2996 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 transmembrane" amino acids 15 to 35 (21 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 114 to 138 (25 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 205 to 226 (22 residues), see Phobius details amino acids 333 to 357 (25 residues), see Phobius details TIGR03717: integral membrane protein, YjbE family" amino acids 14 to 196 (183 residues), 169.6 bits, see alignment E=2.7e-54 PF03741: TerC" amino acids 15 to 195 (181 residues), 132 bits, see alignment E=1e-42

Best Hits

KEGG orthology group: None (inferred from 60% identity to xau:Xaut_3386)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (360 amino acids)

>GFF2996 hypothetical protein (Xanthobacter sp. DMC5)
MDLGADLSWFGTSLKIFLIDILLSGDNALLIALACRSLPAEQVRKAVVLGAAGAVFFRLV
IAALAGTLMAIPLLKIGGGLLLAVISINLLAGEYRRRREGDRPVELDPSLGQGGGLLGAA
LVILIADAIMSLDNVVALAAVSEGHLSLLVGGVLLSVPLIFFGSFVMAEAMKHIPALTFI
GTAFLGWIAGSLIVTDPLWSGWVAANAEALFVLVPPAAAIFVLANARFTADARMSGDGKR
EPAPPTRARLLPVRPTPATVAMAVAAPVPAPMAVAVQAPVPEPVRTAEAAIPAAPIAARA
EIPAEPPRPRPAAAPVRRPAQNLPPAPDYSDKVMIYGLIGLFCLIAVVMISVLIMAHGVG