Protein Info for GFF2990 in Sphingobium sp. HT1-2

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1109 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 684 to 713 (30 residues), see Phobius details amino acids 979 to 1005 (27 residues), see Phobius details amino acids 1023 to 1042 (20 residues), see Phobius details amino acids 1066 to 1086 (21 residues), see Phobius details PF01522: Polysacc_deac_1" amino acids 454 to 563 (110 residues), 115.4 bits, see alignment E=5.7e-37 PF13506: Glyco_transf_21" amino acids 704 to 1012 (309 residues), 75.9 bits, see alignment E=9.6e-25 PF13641: Glyco_tranf_2_3" amino acids 730 to 951 (222 residues), 118 bits, see alignment E=1.9e-37 PF00535: Glycos_transf_2" amino acids 732 to 895 (164 residues), 106.2 bits, see alignment E=6.3e-34 PF13632: Glyco_trans_2_3" amino acids 812 to 1000 (189 residues), 78.8 bits, see alignment E=1.8e-25

Best Hits

KEGG orthology group: None (inferred from 79% identity to sch:Sphch_2491)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1109 amino acids)

>GFF2990 Glycosyltransferase (Sphingobium sp. HT1-2)
MTRPIFFDPTGRRGIWARRALAALLCAIIAATIAFATTLIAVPSEGDLALPLPQPRAAHL
TGMSRLRHDLSKWLPRWPGHVAQARPLNVGFYVPDDESSIASLRRHVGQLDWVVPALVTV
PGSDPTPQFHADPRLDQMIASMGRPPKLLPMVQNLDAHGWNGAGTARLLANPAASRQLAQ
RLAASVAAHHDAGLVMDFESLPSGALPAYFHFLRQLRSDLPTRAKLAVTAPAGEEWPLAR
LGQVADHVIFMAYDQHWQGGTPGPIAAQDWFARAVEDASRRIGRDRIIVALGSYAYDWHD
GGADALSLDEAWLAAHDSDAPVSFDPASGNAGFAYDDDGHRHQVWMLDAAASWNELQALR
RLGIQGVALWRLGSEDPGIWSDLTAFRNGGRPDLRQVASKLDTDVEGSGEILRITATPTD
GSRSIAFGPQGTILRETYHVLPTPYQVRRTGGGQAKMLALTFDDGPDATWTPKILSVLEQ
HHVPGTFFVIGENALEHPGLLQRIVADGDEIGNHSYSHPNLATWSDESTRLELNATQRLV
QAYTGHSMKLFRAPYFGDAEPTTADELGPALAAQKAGYTVVGLHVDPNDWQRPGTDAIVR
QVIDQVHAADAERSGNIILLHDGGGERSQTVAALPQIITTLQKEGYRFVPVSRLAGLSRE
AAMPPVRAGDLTAVRVDVGMFITLAVISALLGWIFYVAISLGIARALLMTFLAWFQTRRD
RQAPPVYQPIVSVIIPAYNEARVIEASVRRVLASDYPALQLIVADDGSKDETSAIVARAF
ADDPRVTLLTLQNGGKAAALNRALMEATGEILIALDADTQFEPLTIARLARWFADPAIGA
VAGDARVGNRVNLVTRWQALEYITAQNLERRALAGFDAMTVVPGAVGAWRRAALDAVGGY
PEDTLAEDQDLTIAIQRAGWRVTFDPEAIAWTEAPESFKALSKQRYRWAFGTLQCLWKHA
AILRSRKPTGLALVGMPQAWLFQIAFAAISPLIDLALLLSIAGTILRVQQHGWAQTSGDV
ATMALYWLVFTGIDIACGWMAYRLDGNKVRYPAHLLVAQRFVYRQIMYWVVVRAIASAIG
GWVVGWGKLERSGRVSVTPAAAVPGMNKV