Protein Info for PS417_15245 in Pseudomonas simiae WCS417

Annotation: PTS sugar transporter subunit IIC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 691 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 30 to 48 (19 residues), see Phobius details amino acids 59 to 87 (29 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 120 to 142 (23 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 262 to 284 (23 residues), see Phobius details amino acids 292 to 316 (25 residues), see Phobius details amino acids 322 to 340 (19 residues), see Phobius details amino acids 346 to 364 (19 residues), see Phobius details amino acids 370 to 392 (23 residues), see Phobius details PF02378: PTS_EIIC" amino acids 28 to 329 (302 residues), 80.1 bits, see alignment E=1.6e-26 PF00563: EAL" amino acids 447 to 671 (225 residues), 196.3 bits, see alignment E=5.4e-62

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU3540)

Predicted SEED Role

"FIG00956795: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TY35 at UniProt or InterPro

Protein Sequence (691 amino acids)

>PS417_15245 PTS sugar transporter subunit IIC (Pseudomonas simiae WCS417)
MAQTLFKLFFTQRLAALASTESLRAIREGLLWILPCLLVSAGFLILSECARMLGFDAQVV
AFFAGLHNQISSVIPLLVAASIGYMLAIQHRLPQLPVAFLCLAHVVVATFILREYPRASA
TFVLFIAIASPLLNVPAIAWLHRYRWTRLVNEDLVGHNLRGTINMVVPGAITALALVVVL
SLLLQIPYVAQLQGPQVLHALESPYGSGLFVTLMNSLLWFFGIHGVYAMQPLFDVLDQAV
ALNGAASAAGEPINYLLNSGLLGSFAFIGGSGGALCLLLAILLFSKSQSMRLLAMASLPL
SLFNVSEVLLFGLPIILNPRLFIPFLVVPALNAMVALTVVQMGWVSPAVVSVPLTAPVLL
NAYLSTHGDFAAVALQLTLLGLGTLVYAPYVLAIHRQATEGGTVYLKSLDMTFRGLEEKG
RLRELDPVLASHKALARQANELSRIQQISDYDFYLEFQPQVSTRTGLCTGCEALMRARDA
QGKVHSPWEFLQWLAQAQLMPDVDVWVASQAVRQYQKWQKLGFVLPMTINISSATLTDAA
YGERLVEILAQAHGHVSVEITEDALVGDIQVTRQTIQKLQAIGAKVYIDDFGTGFSALSY
LHQFPVDFIKIDRSFVVAQRDPKGAQVMTGMLRFCEALNLGVVVEGVETAEQLAFLNTGA
ELIIQGWYFSKALPADQLEDFVRERAALAQA