Protein Info for GFF2968 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 183 to 200 (18 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 326 to 352 (27 residues), see Phobius details amino acids 362 to 379 (18 residues), see Phobius details PF02653: BPD_transp_2" amino acids 106 to 374 (269 residues), 111.1 bits, see alignment E=2.9e-36

Best Hits

KEGG orthology group: None (inferred from 52% identity to reh:H16_B2010)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>GFF2968 hypothetical protein (Xanthobacter sp. DMC5)
MSMADLAPSLPADTARTGGLARLAVAATVALLFAGGGFLLHAEQQGQVIALLAAFVAVFA
LAEKVPVGRRIVGLCRAHPGTVNLTAALSILAIAAALREEHYTLLMMATVALFATAAAGL
TLQMAFAGVPNFAGAAFFAVGAYVAALLGHTGIPHLLVLLIAGLAAAVLGLVLLLPVLRT
RGHYAALVTIAFGLLLRAFLEVNDVLGGPQGMKVKSFSLFGLDFSRVTEIGPYDVSFYLP
YALASCALFALAFFLVRRLETSFVGVALDAVRSDEVAASVFGLSIARWKATAFLLGNAMI
GVAGALYGMMNGFVNPNSANFGDSLIMLSILVLGGLGNLWGAVVAAVVILVIPEKLQAIQ
EFRLIIFALLVIAILRFRPSGLMPRAARDFSALVKGGSR