Protein Info for GFF2957 in Variovorax sp. SCN45

Annotation: UPF0192 protein YfaS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1570 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details PF01835: MG2" amino acids 341 to 437 (97 residues), 62 bits, see alignment 1.1e-20 PF07703: A2M_BRD" amino acids 673 to 816 (144 residues), 59.5 bits, see alignment E=9.3e-20 PF00207: A2M" amino acids 881 to 968 (88 residues), 57.7 bits, see alignment 1.7e-19 PF17973: bMG10" amino acids 1448 to 1554 (107 residues), 36.1 bits, see alignment 1.4e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1570 amino acids)

>GFF2957 UPF0192 protein YfaS (Variovorax sp. SCN45)
MTMHTPLQSLWRRLFPLALAVATACASMQPPAALAAPEPQPQPLENSRTPYTGEPFFLLS
DATFASDQTALVRLEVNQPSALEQVGGVDVLVYRIPDALPFLQKQKNLHRVQVGARAADE
GLANTLTHLWDSWVVKSRLAWQQMFSSSARRAVTQQAPELKTPAKLTQPSVFEEPRQFRP
IPGLPVVERFRYPVHKAKAIGLPKGVKLEGSSSEFINASEGNVFVPVGKRAPGLYLVEAI
SGQFRATTLLFVSDTVAITKVSGDQMLVWAAQRAAGAPVPGTKVVWTDGVGVLKSGEADG
QGLVKLDRKSPEQTYVFGQDPAGGVFISENFYYDSEIYNAKVYTVTDRPLYRPGDWVNVK
VSGREFRSARESVALKDADLALAVLDPAGQLVHAQKLAFSGAKGADARFPLPDNAVAGGY
ELRLAMGGDTYTAAFRVADYQKPHFDIVLLPEKTDFKTGEPVGGKLQLNYPDGKPVTHAR
VSLTARSQKLAMVNGELDYAGQFPVKLQQAELETDGDGIAKFSLPAATEPSRYLLTALAT
DGAAYRVRTSREILVERGAASFRLAADRQFSQPGQAVAFKFAASQRAGTTTAATAPDTPA
AQARPATWQWVRLEDRSKQSGAMPSGDTLSINFPQPGSYTVSLLDDKGRIVGGASHWVSG
DGVKAPAGSVGMVLDRASYRAGDTAQVLVSFPEPVDNALLTLERDRVEATALMGRGADWI
KSERVAPTQWKFTLPVRDVMSPNMTLSVAYVKNGDYVFQNQGIMVEQERIVLAFTPDKAV
YEPGDTVTIDVSATLAGKPVATDLAVGVVDEMIYVLQPEIAPAISDFFYHPRRNNVRTSA
SLSFIGYDLATSKLGTLPGARQVNDRAVKVLERPRRDNIDTAAWEPRLATDASGHTRFSF
TMPDSLTRWRITGRAMNAAGAVGQQVSWVRSDKAFYAKWTSPDWQRQGDKAQASLALFNQ
TGREAKVEWTASGAGVERKDTVTVRPGVNFIALPIAAGEADKSGAVSVTLRQDARVVDKL
DVPVRRVPVAWRAPRGKSIDLASGSAALALPADASRVRVSLAQDAAAGAFSQQLDALIAN
PYGGVEQTASRMLPLSIALQSLSPAQQALAPALTQRLATARLSLAQMAGPQAQFGWWGRI
MPADAFLTTYAYYADWRATQALRVTLPASNWQRLLDVYAKDGQKLPALQRALALSWMQEM
GLPVGSMAGGLADQLAAQPAGDAQRAQRRGSLVMVDSAVPDTRDMALVLAVQTAGPAVAS
AKARAAADEAAARLAGVDTPLVQALLMATQRAGADKAAAVLAEVRADAPSIDRAQTLLWL
QRAMGGGKLAASDDVPTLAAPWVRATDGGGTSWRLPSGTAVPSTLELPAGQKAAWAFVSY
ESSETQAPALDAKVERTLWRVVTEPRPAPQAPAAPAPGQPAAAPSASVSTVDDGRITVKL
EAVKPGTPLDTNALYLDQLTVTAPKAMRWSLVEAALPPGAAVEESTWGIDMADSAGKLQP
MERAQSQGTAQGYAVPVDSLVAGTPLTVRHLVRFSQRGTFKLPPARLFRMYEPEAKAFED
GGRWASVEVR