Protein Info for GFF2955 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF09909: DUF2138" amino acids 12 to 550 (539 residues), 390.7 bits, see alignment E=5.8e-121

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>GFF2955 hypothetical protein (Variovorax sp. SCN45)
MDRRRKWFAAGAAAIVLLAAGVVVVKMRRPHFDGDINALGVDLSRPFAYVSTPALSRLPR
DIVQAPVVRDVLTEDFAFYYEDQEDRLSLRGAIKRIAYERETTWTDQLLATALDEPAEMA
WWPDAKGAPRYWAVTMTRGAVATALQGLASIAAKDSQLSILGTLRVNGGDVNAYALVLSP
RRTLVLLSQGNRVVVLSDPGLLFNGEGQASAPAQEVVEGLLSGDARAQSAWRRGFGLAEQ
DGAGNSSIVADARLLSFGYQHFFPGVQAVRFDVAQNGATLRTAVRVKAAGTLPAAPGDRE
LWSALPANPAACTMLPVEWTQMEQLMADAPPSPSAADSDKAAAPPDAAALKALVAQFEGP
AAVCWYARSQLHTPLFVAQMKAGADPKTDEALASLARWVISSNAADTDDSAAKPGVGKWQ
SQVKAPWGPYADGDAKAYKPTLARQGRWIAFSPDDKLVDLALNTQARRYPGVADTLPPAG
GTTLVVGAPAQIADLLQREAMAVLPAEQEILRQAARQHLVPRLDALRKLPPARAVTQGAG
DGNGWVPVEWQAMSASPASSTQQPK