Protein Info for PS417_15075 in Pseudomonas simiae WCS417

Annotation: NAD-glutamate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1622 PF21075: GDH_ACT1" amino acids 35 to 178 (144 residues), 164.1 bits, see alignment E=7.2e-52 PF21073: GDH_HM1" amino acids 344 to 403 (60 residues), 80.3 bits, see alignment (E = 3.1e-26) PF21076: GDH_ACT2" amino acids 407 to 496 (90 residues), 114.7 bits, see alignment 9.8e-37 PF21079: GDH_HM2" amino acids 503 to 546 (44 residues), 44.7 bits, see alignment (E = 4.2e-15) PF21077: GDH_ACT3" amino acids 552 to 631 (80 residues), 91.9 bits, see alignment 6.6e-30 PF21078: GDH_HM3" amino acids 648 to 711 (64 residues), 96 bits, see alignment (E = 4.4e-31) PF05088: Bac_GDH_CD" amino acids 733 to 1227 (495 residues), 900.6 bits, see alignment E=9.6e-275 PF21074: GDH_C" amino acids 1272 to 1609 (338 residues), 429.8 bits, see alignment E=3.1e-132

Best Hits

Swiss-Prot: 83% identical to DHE2_PSEAE: NAD-specific glutamate dehydrogenase (gdhB) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

Predicted SEED Role

"NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form" in subsystem Glutamate dehydrogenases or Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 1.4.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.4.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UG67 at UniProt or InterPro

Protein Sequence (1622 amino acids)

>PS417_15075 NAD-glutamate dehydrogenase (Pseudomonas simiae WCS417)
MAFFTAASKADFQHQLQAALAQHISEQALPQVALFAEQFFGIISLDELTQRRLSDLAGCT
LSAWRLLERFDHTQPQVRVYNPDYERHGWQSTHTAVEVLHHDLPFLVDSVRTELNRRGYS
IHTLQTTVLSVRRGAKGELLEILPKGTQGEGIQQESLMYLEIDRCANAAELNVLSKELEQ
VLGEVRVAVADFEPMKAKVQDLLAGIDASQFSIDGEEKAEIKNFLEWLVGNHFTFLGYEE
FVVRDEADGGHIEYDADSFLGLTKLLRAGLTADDLRIEDYAVAYLREPTVLSFAKAAHPS
RVHRPAYPDYVSIREISADGKVIKEHRFMGLYTSSVYGESVRVIPYIRRKVAEIERRSGF
QPKAHLGKELAQVVEVLPRDDLFQTPVDELFSTVMSIVQIQERNKIRVFLRKDPYGRFCY
CLAYVPRDIYSTEVRQKIQQVLMDRLKASDCEFWTFFSESVLARVQLILRVDPKNRLDID
PLQLEKEVVQACRSWQDDYSSLVVESFGEAHGTNVLADFPKGFPAGYRERFAAHSAVVDM
QHLLSLTEANPLVMSFYQPLGQVSGQRELHCKLYHADTPLALSDVLPILENLGLRVLGEF
PYRLRHANGREFWIHDFAFIAAEGVNLDIQQLNDTLQDAFVHIVHGDAENDAFNRLVLTA
GLPWRDVALLRAYARYLKQIRLGFDLGYIASTLNNHTDIARELTRLFKTRFYLARKLTAD
DLEDKQQRLEQAILSALDDVQVLNEDRILRRYLDLIKATLRTNFYQTDANGQNKSYFSFK
FDPRAIPELPKPVPKFEIFVYSPRVEGVHLRFGNVARGGLRWSDREEDFRTEVLGLVKAQ
QVKNSVIVPVGAKGGFLPRRLPLGGSRDEIAAEGIACYRIFISGLLDITDNLKDGALVPP
ANVVRHDDDDPYLVVAADKGTATFSDIANGIAIDYGFWLGDAFASGGSAGYDHKKMGITA
KGAWVGVQRHFRERGINVQEDSITVVGVGDMAGDVFGNGLLMSDKLQLVAAFNHLHIFID
PNPNPATSFVERQRMFELPRSAWTDYDTSIMSEGGGIFSRSAKSIAISPQMKERFDISAD
KLTPTELLNALLKAPVDLLWNGGIGTYVKASTESHADVGDKANDALRVNGNELRCKVVGE
GGNLGMTQLGRVEFGLNGGGSNTDFIDNAGGVDCSDHEVNIKILLNEVVQAGDMTDKQRN
QLLASMTDEVGNLVLGNNYKQTQALSLAARRAYERAAEYKRLMSDLEGRGKLDRAIEYLP
TEEQLTERAATGKGLTRPELSVLISYSKIDLKEALLKSLVPDDEYLTRDMETAFPPSLVA
KFSEAMRRHRLKREIVSTQIANDLVNHMGITFVQRLKESTGMSPANVAGAYVIVRDIFHL
PHWFRQIEALDHQVSADVQLELMDELMRLGRRATRWFLRSRRNEQDAGRDTAHFGPHLAA
LGLKLDELLEGPTREGWQNRYGKYTEAGVPELLARMVAGTTHLYTLLPIIEAADVTGHDA
AEVAKAYFAVGSALDLPWYLQQISDLPVANNWQAQAREAFRDDVDWQQRAITISVLQMAD
APQDMEARVALWLEQHKDMADRWVAMMVEIRAAVGTDYAMYAVANRELLDLALSGQSALQ
AV