Protein Info for GFF2940 in Xanthobacter sp. DMC5

Annotation: Multidrug resistance protein MdtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1043 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 377 (18 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 431 to 453 (23 residues), see Phobius details amino acids 463 to 489 (27 residues), see Phobius details amino acids 519 to 539 (21 residues), see Phobius details amino acids 849 to 871 (23 residues), see Phobius details amino acids 878 to 898 (21 residues), see Phobius details amino acids 905 to 929 (25 residues), see Phobius details amino acids 950 to 971 (22 residues), see Phobius details amino acids 981 to 1006 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1007 (1001 residues), 768.7 bits, see alignment E=8.8e-235 PF03176: MMPL" amino acids 333 to 489 (157 residues), 27.7 bits, see alignment E=1.3e-10 amino acids 799 to 1006 (208 residues), 21.4 bits, see alignment E=1.1e-08

Best Hits

KEGG orthology group: None (inferred from 81% identity to azc:AZC_3690)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1043 amino acids)

>GFF2940 Multidrug resistance protein MdtC (Xanthobacter sp. DMC5)
MALNVSAWAIRKPVPALVFFFILTALGIVHFRELPVTQMPNIDLPIVMVTVTQSGAAPSE
LETQVTKKVENAIAGISGVKHITSSISEGASVTLVEFHLETLVDRAVNDTRDAITKIRMD
LPRSIDEPQIQRIDIEGLPIVTYAVSAPNMTTEQVSWFIDDTLARALQGVRGVAQVKRQG
GVDREIRISLNPDRLMSLGITAAEVSRQLRATNLDVSGGRGEVGTQEQPIRTLAGASSVE
ALADTRIVLSNGRSVRLGELGSVVDGAAEQRVFARLDGKSVVAFGVYRAKGFSDVTVYDR
VTEELAKLRAAHPDVTITEIDTTVRFTKSDYESAMHTLIEGAILAVIVVFLFLRDIRATL
ITALAIPLSILPTFWVMDMLGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHMRMGKSP
YRAAIEAADEIGLAVVATTLTIAAVFAPVSFMGGIAGQYFKQFGLTVAIAVLFSLAVARL
ITPLVAAYFMKDTGHREGRDSLVMRGYVRLLAWSVRHRFATIGMGIAIFAGSIWLSTLLP
SGFLPTNDISRALLSVELPPGSTIAETQKVADDIARAALSLPEVKSVYATAGTGGAGGLA
LSSGEVRKAQVVINLKPRSQRTIDQKTFETQFSKTLAAMPDLRVSWSQNGQNTQRGFQVI
LSGSDGAAVAEAAVAVEKAVRADVPELANVVSSAALDRPEIRIVPKLDEAAELGVSVDTI
AETVRIATIGDISANLAKFSAKDRQIDIRVQLAENARTRLSTFDALKVPTASGGAVPLSA
VADVQFGKGPTALDRYDRARRVAVEADLVGDTPLGDALAKVKALPAAQNLPAGVTLKEAG
DAEIMAEVFSGFAMAMAAGLMLVLAVLVLLFHDILQPITILVSLPLSVGGAFIALLITGN
SVSMPVVIGFLMLMGIVTKNAILLVDFAIESMHQGVDRFTALIEAGRKRAQPIVMTTIAM
VAGMVPSAMALGEGGSFRAPMAIAVIGGLITSTVLSLVFVPAVFTVMDDLSHFLGRIFGR
FIGGKDEPDGHDLPPALHHPAGE