Protein Info for GFF2929 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 568 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 54 to 78 (25 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 110 to 129 (20 residues), see Phobius details amino acids 136 to 161 (26 residues), see Phobius details amino acids 170 to 192 (23 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 237 to 262 (26 residues), see Phobius details amino acids 288 to 307 (20 residues), see Phobius details amino acids 327 to 349 (23 residues), see Phobius details amino acids 355 to 374 (20 residues), see Phobius details amino acids 385 to 404 (20 residues), see Phobius details amino acids 416 to 434 (19 residues), see Phobius details PF00860: Xan_ur_permease" amino acids 24 to 397 (374 residues), 144.4 bits, see alignment E=2e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (568 amino acids)

>GFF2929 hypothetical protein (Xanthobacter sp. DMC5)
VGSGRLRYDLESHPPLPVLIGSVAQHMGLMAVTLVFPLLVAQAAGVDAEMQRRYLDLAML
AMGVATLFQCWGRPILFLPRTGCGYLLPAVFTAAYLPAALYAARAGGLEAVAGMTIAAGI
AEVLFSRVMHRVRPFLPIEIVGLVVMLIGIILGVVAIKLMVGYSQSMAQVTLTGTGGAVA
GLAVMIALAAWGSPPLRAMAVLAGLAAGSAVHLALGFGAPRPEVSVKPLLELIRWPLVVP
SFSVGLLPGFLAGALACILRSFGDMVASQRANDPQWRRPDYANIEAGVLADGLGTLFAGL
IGTMGLNTYSASVGLSVATEVKARRVGLGVGLGWIALAFIPGSSVVVMAIPRPVLGAALL
FASAFIVLSGISILGQRMLDARRTIVVGLGFLVGISFDEIPDFYARVLSESARELVTSSL
VLGLFTALALNALFRIGAVKSHRLVWSPAEGHAALHLFLMDAAAADGARTEEVGRIAQIA
EEFATAAPSLAEGPVEVTTRFDEFVLDVSFAWAGGALQPGPAPSFDTGVDEDAMLNGITF
HLIQRLADRTHRRTLPDGRHELRCEVDQ