Protein Info for GFF2928 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Permease of the drug/metabolite transporter (DMT) superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 39 to 56 (18 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 102 to 120 (19 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details PF00892: EamA" amino acids 7 to 142 (136 residues), 102.1 bits, see alignment E=1.4e-33

Best Hits

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (199 amino acids)

>GFF2928 Permease of the drug/metabolite transporter (DMT) superfamily (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MKQQAGIGILLALTTAMCWGALPIAMKQVLEVMEPSTIVFYRFLMASIGLGAILAVKRKL
PPLRIFRKPRWLVLLAIATCGLFGNFILFSSSLQYLSPTASQVIGQLSPVGMMVASVFIL
KEKMRGTQVIGALMLLSGLVMFFNTSLIEIFTRLTDYTWGVIFGVGAAMVWVSYGVAQKV
LLRRLARSRSCFYCTLYVR