Protein Info for GFF2923 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Cytochrome c-type biogenesis protein ResA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 175 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF08534: Redoxin" amino acids 36 to 161 (126 residues), 93.4 bits, see alignment E=1.8e-30 PF00578: AhpC-TSA" amino acids 36 to 152 (117 residues), 73.2 bits, see alignment E=2.8e-24 PF13905: Thioredoxin_8" amino acids 58 to 150 (93 residues), 43.9 bits, see alignment E=3.7e-15

Best Hits

KEGG orthology group: None (inferred from 71% identity to pna:Pnap_0217)

Predicted SEED Role

"Cytochrome c-type biogenesis protein ResA" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (175 amino acids)

>GFF2923 Cytochrome c-type biogenesis protein ResA (Hydrogenophaga sp. GW460-11-11-14-LB1)
MTDLSPRGQHRRRTLQAAAALGALGALGLAGCAGRESAPDSTFVLLDGSKATTADLKGKV
TLVNFWATTCVTCVKEMPSIIATYQKYQGRGFETVAVAMEYDPPAWVLNFSQSRQLPFKV
ALDNTGDIARQWGDVKLTPTTYLVDKQGRIVKRFVGEPDFPALHALIEELLAQQA