Protein Info for GFF2921 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 817 transmembrane" amino acids 603 to 618 (16 residues), see Phobius details amino acids 632 to 651 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (817 amino acids)

>GFF2921 hypothetical protein (Sphingobium sp. HT1-2)
MSLGVCIPELIEQGKIPKAKARQAQKLYDELLARYDHEMGDAAAKSAATERTIAILKGEA
QQAKRRKFMAIAAQQDAGARMRTYNGGVKAGKPVDPRAAVAVMVRDDKASYSPLELRQRA
IKVRVHGMMDRMLADLRKTVTGKVRDPALESDIVRALNGEAVDSLNAREMAESVRGAMDY
LRQRFNMAGGHIPKLEGYDLPHRWSVQQLRGVNFEQWLGDIMPALDRARMIDRDTGLPFS
DDKLRTVLEETFQGIRTEGWSRRKPGSAGTSSIANRHADERFLHFRSADDWLRINDQYGA
AGPFDTVMGHVEMMSREIAAMEILGPNPEATVRFLGDSIIKDAQLKGDASAINKANAAAA
QVRTLWDEYSGRNAAPVNERLARNFGTVRAVQTSAKLGSAVLSAVGDFAMSAMTRRFNGM
PVTSILGDYVRLLRPGNKDDMMLAMHMGAAADEWAEMAASMNRLTGEELTGEFAQRLASG
TLRLSGLSRHTMALRATHARQVSGLVTREAGKSLEQLDPAFRAMLGRYGIGATEWDGIRA
TPLTQERGAGWILPDKVADQKLGDKLLEMIQSETDFAVPTVDLRTRAAMNTVGRRGTWVG
EIARSAFLFKSFGLTVLNLHGRRMLDMGGWSAARYAAGLTVLTTLAGAMAVQMKEVQKGR
DPMAMKSPQFWGKAMLQGGGWGIFGDFIGSSESRFGTSLGVTATGPMFQTASNLADLTVG
NAMRATRGDDTKFWQGTLQIMRQEVPVASSLWYVRPIYDRLILNNMDRMIDPDHDANVAR
IMRKAEEDGGGYYLPPDLSEDVRAPDFAGAFAAPPEE