Protein Info for GFF2919 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 transmembrane" amino acids 14 to 39 (26 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details PF04290: DctQ" amino acids 27 to 155 (129 residues), 95.5 bits, see alignment E=1.2e-31

Best Hits

KEGG orthology group: None (inferred from 51% identity to bge:BC1002_3696)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (164 amino acids)

>GFF2919 no description (Variovorax sp. SCN45)
MHLLTHLNARLSRWAMYIACVCLVGLLAVVVYGVVLRYVFNDAPPYVEQVALLLVISVAM
FGASAGVRDAGHIGLDSLVKALPPKAQFWCKALTYVLTIGFAIALFAGGAEMAVSTREST
IPTLGLSEAVRYVPILFAGVLITLFSIEHLAAQFTGQKVVPSWH