Protein Info for GFF2913 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 transmembrane" amino acids 9 to 33 (25 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 140 to 162 (23 residues), see Phobius details amino acids 184 to 208 (25 residues), see Phobius details amino acids 239 to 257 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 83 to 261 (179 residues), 44.6 bits, see alignment E=7e-16

Best Hits

KEGG orthology group: None (inferred from 88% identity to xau:Xaut_0859)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (268 amino acids)

>GFF2913 hypothetical protein (Xanthobacter sp. DMC5)
MGLLAVNRIYAAITAIVLAFVVLPLGAVIWVSFFANRILSFPATGYTLDWYVRAWQLDSF
RNGFITSVETALVAVALSLALGVPASLALVRYRFPGRDAIQTLLLSPMVVPGIVGGAALF
MAFIELEILLDVDISGTLPGLFVAHGLIALPWTVRLVTASLVGMSPSYEEAAQSLGAGRL
TTFFRVTLPIIKPGIVAAALFSFVISFIDLEKSIFLVGPGRTTLQIALVSYLEWNLDSTV
AAVATVQILIIGVLLLVSDRYARLSRAF