Protein Info for GFF2910 in Variovorax sp. SCN45

Annotation: BUG/TctC family periplasmic protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF03401: TctC" amino acids 57 to 328 (272 residues), 201 bits, see alignment E=1.4e-63

Best Hits

Swiss-Prot: 35% identical to Y4329_BORBR: UPF0065 protein BB4329 (BB4329) from Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)

KEGG orthology group: None (inferred from 90% identity to vpe:Varpa_1899)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>GFF2910 BUG/TctC family periplasmic protein (Variovorax sp. SCN45)
MTINRRGALGAALATTLAATLPVRAFAQGSAGSGGNWPSKPIRLIVPYPPGGSSDIIARS
ISQPLSEALGQSVIIDNRAGANGNLGADLLAKAPADGYTVMLCDLGALAISPSLYPKLPF
DPSKDLRSVAMLAYSPHLLVVHPSVQAGTLKELVELSKKSDLNFAVTASGSTAHLAGIEL
QRKVGAKWEYVPYKGGVQAVLDTVSGQTQVLMNGMLATYPQVQAGKLKLIAVSKATRMPL
IGNVQTIAEQGVPGYESGTWQGVVAARGTPDTVIARLNRELTRIIRTPDIRARLAGQGAE
VVTMTAPEQDQFFAKERARWARVIQEANVKLD