Protein Info for GFF2908 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: SSU ribosomal protein S10p (S20e)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 104 TIGR01049: ribosomal protein uS10" amino acids 5 to 102 (98 residues), 148 bits, see alignment E=4e-48 PF00338: Ribosomal_S10" amino acids 8 to 102 (95 residues), 120.1 bits, see alignment E=2.1e-39

Best Hits

Swiss-Prot: 98% identical to RS10_POLSJ: 30S ribosomal protein S10 (rpsJ) from Polaromonas sp. (strain JS666 / ATCC BAA-500)

KEGG orthology group: K02946, small subunit ribosomal protein S10 (inferred from 97% identity to dac:Daci_0390)

MetaCyc: 74% identical to 30S ribosomal subunit protein S10 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S10p (S20e)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (104 amino acids)

>GFF2908 SSU ribosomal protein S10p (S20e) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSTKQKIRIRLKAFDYKLIDSSAAEIVDTAKRTGAIVKGPVPLPTRMKRFDILRSPHVNK
TSRDQLEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ