Protein Info for GFF2906 in Xanthobacter sp. DMC5

Annotation: Inner membrane transport protein YdhP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 40 to 64 (25 residues), see Phobius details amino acids 72 to 95 (24 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 130 to 152 (23 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details amino acids 201 to 225 (25 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details amino acids 267 to 285 (19 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details amino acids 328 to 349 (22 residues), see Phobius details amino acids 355 to 376 (22 residues), see Phobius details PF07690: MFS_1" amino acids 10 to 330 (321 residues), 133.7 bits, see alignment E=1.2e-42 PF06779: MFS_4" amino acids 15 to 371 (357 residues), 29.7 bits, see alignment E=6.5e-11 PF00083: Sugar_tr" amino acids 42 to 181 (140 residues), 30.7 bits, see alignment E=2.4e-11

Best Hits

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 74% identity to mpc:Mar181_0104)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>GFF2906 Inner membrane transport protein YdhP (Xanthobacter sp. DMC5)
MKINLPLVALAIGAFGIGVTEFSPMGMLPIIASDLGVSIPAAGLLVSAYAFGVLVTAPIM
TLSFASMPRRRLLVLSMGIFTIGNLISAFADGYWMLLAGRIVTSFNHGAFFGVGAVVAAS
VVPADKRAGAVAAMFSGLTIATIGGVPLAAWVGEAVGWRMAFFGIAVIGAIAMVAVRLSL
PPLEVQGESDMRAELKVLMRGPVLAALLLTVVSSSAMFTVFTYIAPILQVETGAVSGFVT
AMLVVYGLGLALGNWLGGRFADRSLDGTLIGSLTAVAVLLVLFVPGMHSHLATVPLVFLW
GIASFALVPPLQMRVVHEASEAPHLASAMNIGAFNLGNALGAALGGAVIDAGLGYPAVSL
AGAGTALAGLAFTLLLRRGRRGLEAAPAQG