Protein Info for PS417_14845 in Pseudomonas simiae WCS417

Annotation: endoribonuclease L-PSP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 PF14588: YjgF_endoribonc" amino acids 24 to 136 (113 residues), 57.6 bits, see alignment E=1.3e-19 PF01042: Ribonuc_L-PSP" amino acids 24 to 153 (130 residues), 48.2 bits, see alignment E=1.1e-16

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfs:PFLU3456)

Predicted SEED Role

"RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UIL0 at UniProt or InterPro

Protein Sequence (156 amino acids)

>PS417_14845 endoribonuclease L-PSP (Pseudomonas simiae WCS417)
MTPDEKYQAAQQRLGYQLDEFKIGGNYTPLVRDGNHLYISGQIPRVGDAIVLPGKVGASL
TVAQAQIAAGISALRCLGLLKQALGSLDQVRAIPRITVYVRSAEDFDQQSEVANGASDLL
HEILGAAGAHTRTSVGVMQLPKSAAVEVDMIAVAHG