Protein Info for GFF2890 in Xanthobacter sp. DMC5

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 30 to 48 (19 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 92 to 110 (19 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 214 to 240 (27 residues), see Phobius details amino acids 242 to 242 (1 residues), see Phobius details amino acids 245 to 266 (22 residues), see Phobius details amino acids 271 to 292 (22 residues), see Phobius details amino acids 298 to 320 (23 residues), see Phobius details PF02653: BPD_transp_2" amino acids 25 to 309 (285 residues), 144.6 bits, see alignment E=1.7e-46

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 91% identity to xau:Xaut_0643)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (349 amino acids)

>GFF2890 High-affinity branched-chain amino acid transport system permease protein LivH (Xanthobacter sp. DMC5)
MTRFIAPLFLVVFALLPLGLTDPYLLNALIITGILTICAMSLNLLLGFTGQLSLGHVAFF
GIGAYVSALTALGFDVSLPFGLRVTHEGGSPLLGFVLAIVLTGLCGYLIGRLSFRVRGAY
FVIVTISFAEVVRLVALNWVELTQGPLALTAIPNMVLPVPSLGDVALRSKMQNYYLVLAV
GVASYLLIARLVASRFGRAMRGLKENESLALSLGINATRTLTVAATVSAAMAGAAGSLYA
HYIRIIDPDVFLFSYTVTMVIMVVSGGKGTLAGPLVGGIIFGLLPVALRPVMAPEAQWIV
YGAILIAILFLMPRGIVPALEGLGERIAARRKAGDKPTDAMPAKMGANP