Protein Info for GFF2877 in Xanthobacter sp. DMC5

Annotation: Oxalate:formate antiporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 29 to 50 (22 residues), see Phobius details amino acids 67 to 89 (23 residues), see Phobius details amino acids 96 to 114 (19 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 153 to 173 (21 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 237 to 260 (24 residues), see Phobius details amino acids 274 to 293 (20 residues), see Phobius details amino acids 314 to 331 (18 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details amino acids 371 to 391 (21 residues), see Phobius details amino acids 402 to 422 (21 residues), see Phobius details TIGR04259: oxalate/formate antiporter" amino acids 28 to 429 (402 residues), 527.5 bits, see alignment E=1.1e-162 PF07690: MFS_1" amino acids 37 to 286 (250 residues), 77.1 bits, see alignment E=6.3e-26 amino acids 293 to 422 (130 residues), 46.4 bits, see alignment E=1.4e-16

Best Hits

KEGG orthology group: K08177, MFS transporter, OFA family, oxalate/formate antiporter (inferred from 57% identity to azc:AZC_3633)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>GFF2877 Oxalate:formate antiporter (Xanthobacter sp. DMC5)
MAAVINAVEDDTLDQGGVTYPLATRRYRWFQLIVGIAAITMVANLQYGWTLFVLPMDQKY
HWGRPAIQLAFTIFILAESWLLPVCGWLVDRRGPAQLTFVAGLMTGGSWVLNSIASELWI
LYVSSAIGGLGVGIVVAAAIGNALKWFPNNRGLAAGLTSGAFGVASALTIIPLQTMIGNS
GYQNTFLWFGLAQGTGLLVLSLVFRAPQRGQVEKATNTVVSHAKVERAPQEVVRTGMFWV
MYAVFVLVCTGGLMATAQLAPIAHDLGLEKSPVTLLWVTLPALTFALSLDRMLNGVTRPF
FGWVSDKFGRENTMFFAFLLEGVGIFALSHFGTNPVAFVLLTGLVFFAWGEIFSLFPALT
TDVFGAKNAAGNYGLIFTAKGVASLLVPLGNVVAEYSGGWHTVFWLSCAMDVAAAFIILF
VMKPMRIRATSGA