Protein Info for GFF2869 in Variovorax sp. SCN45

Annotation: putative anion permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 56 (24 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 128 to 151 (24 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 199 to 225 (27 residues), see Phobius details amino acids 253 to 273 (21 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details amino acids 324 to 346 (23 residues), see Phobius details amino acids 368 to 390 (23 residues), see Phobius details amino acids 401 to 425 (25 residues), see Phobius details amino acids 446 to 469 (24 residues), see Phobius details PF16980: CitMHS_2" amino acids 30 to 469 (440 residues), 660.8 bits, see alignment E=9.3e-203

Best Hits

KEGG orthology group: None (inferred from 91% identity to vpe:Varpa_1946)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (470 amino acids)

>GFF2869 putative anion permease (Variovorax sp. SCN45)
MQKTIRLTAAAVLLLLLPALATAADFDGGKLSPLWGVPFAGILLSIALFPLLAPAFWHHH
YGKISAAWALAFLLPFAATYGAALAGEQLVHALVAEYIPFIILLTALFTVAGGIHIRGNL
RGAPGLNTAILAIGAVLASFMGTTGASMLLIRPLIRANDNRAHRVHVIVFFIFIVSNAGG
SLTPLGDPPLFLGFLKGVGFFWTVQNILPETIFILGVLLALFYLIDRHYYRKEGVLPVDP
TPDTPGIGFDGASNFWLLGGIVALVLMSGFWKSPVVFDVFGTEVGLPGLLRDAGLLLIAV
VSYRLTAPKVHADNQFEWGPMAEVAKLFAGIFLTIIPVIAMLKAGTQGPFGAIVSAVTRA
DGQPDPAMYFWATGVLSSFLDNAPTYLVFFNTAGGDPAALMTTYASTLAAISAGAVFMGA
NTYIGNAPNLMVKAIAESRGVRMPSFFGYMAWSVTILVPLFVICTFIFFR