Protein Info for GFF2867 in Variovorax sp. SCN45

Annotation: DNA recombination protein RmuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details PF02646: RmuC" amino acids 150 to 440 (291 residues), 251.6 bits, see alignment E=4.6e-79

Best Hits

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 91% identity to vap:Vapar_1775)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (455 amino acids)

>GFF2867 DNA recombination protein RmuC (Variovorax sp. SCN45)
LDTALILIGLAVLAVIQLVLVIWLLARRQPPADNSELMRALATIGSANERTERELRREIA
DSSRGARQETTQAFATFQRSLVQQGAEATRTQNAQLDAFSLQLASLQKTLADTLSTQLQG
LSESNARRLSEVRATMESQLVQLQQTNAAKLDEMRKTVDEKLQSTLETRLGESFKQVADR
LEQVHKGLGEMQTLAVGVGSLQRVLTNVKTRGVFGEVQLEALLEQVLTPDQYAKQIETKP
RSGQRVDFAIRFPGRGEEGAPVWLPIDAKFPRDDYERLIDAHERADAAGAELAAKALEAR
IRTEAKSIADNYLAAPHTTDFAILFLPVESLYAEVLRRPGLMDAIQRQHRVTLAGPTTLL
AMLNSLHMGFRTLALEQQASEVWKVLGAVKTEFERYGDWVGRIKEQVAKASDTLDKADTR
AKQMRLALRKVEALPEAQSQALLPPTADSEGDDTP