Protein Info for GFF2865 in Xanthobacter sp. DMC5

Annotation: 3-hydroxybenzoate transporter MhbT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 63 to 82 (20 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 150 to 174 (25 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 261 to 283 (23 residues), see Phobius details amino acids 297 to 319 (23 residues), see Phobius details amino acids 327 to 345 (19 residues), see Phobius details amino acids 351 to 374 (24 residues), see Phobius details amino acids 386 to 409 (24 residues), see Phobius details amino acids 416 to 435 (20 residues), see Phobius details PF07690: MFS_1" amino acids 32 to 389 (358 residues), 157.8 bits, see alignment E=3.7e-50 amino acids 307 to 436 (130 residues), 37.2 bits, see alignment E=1.7e-13 PF00083: Sugar_tr" amino acids 41 to 430 (390 residues), 90.2 bits, see alignment E=1.5e-29

Best Hits

KEGG orthology group: None (inferred from 56% identity to xau:Xaut_4356)

Predicted SEED Role

"4-hydroxybenzoate transporter" in subsystem Cinnamic Acid Degradation or Gentisare degradation or Phenylpropanoid compound degradation or Salicylate and gentisate catabolism or p-Hydroxybenzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (450 amino acids)

>GFF2865 3-hydroxybenzoate transporter MhbT (Xanthobacter sp. DMC5)
MPNRLPLTRDVKEIIDAGSMTAGRWAVVGLCFVIALLDGFDTQSIAFIGPAIAQDFKMNP
ADMTWVITASIIGMAIGAIGLGSFGDRFGRRKAIMIAIALFGAFSLAGAYATSPTQIIVL
RFLIGLGMGGATPSVLALTGEYSTAPKRGLMITAVLLGLPAGAMLGGLIAASWLPVLGWR
GIFLLGGALPLALLVVIYALLPESPAFLVSRNKAGDQDLARRLLGRMTGQIVPTDVQIIS
PVQVEKGASIAGLFEARYRGVTLAISAIYLFNWIAWFLLLQWLPTALTTLGLEKAQAAYG
TVTVNAAFIAMALPLSALLPKVDPRKLLTVMFMVGIAVAIGLGLAGDRWPVVFTLIALAG
FGIGGQQLVLNYLIANAYPTQLRATATGWGIGIGRSGAIVGSAVGGQLLSGAGPSGYFMA
LAIPLALAAFATLTVRRTSSDGAAVPVASH