Protein Info for GFF2856 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 348 to 362 (15 residues), see Phobius details PF01926: MMR_HSR1" amino acids 46 to 156 (111 residues), 34.3 bits, see alignment E=1.2e-12

Best Hits

Swiss-Prot: 49% identical to Y1443_ACIAD: Uncharacterized protein ACIAD1443 (ACIAD1443) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: None (inferred from 60% identity to bge:BC1002_2312)

Predicted SEED Role

"GTP-binding protein EngA" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>GFF2856 hypothetical protein (Xanthobacter sp. DMC5)
MPDASLRQPATRAHPARWRDVLCVLSHREGDLARLDELAAADAPVVTVIGKYNHGKSRLL
NELMRRDAFAVADRRQTVQLAECRHAGVRWLDAPGLDADVAGEDDRHALRAVWLSSDIRL
FVHAASEGELDAAERALIETLRADSQRTGRETLIVVTQADQMEDDDALDRVVSAIADQVP
GAGLHVVSSTRHRRGLEDGKTLLIQRSGIPELERALADALARVPAARAHETRLLLGEIRA
ELGSVRRAEAETLASLRQQQEAQRHAFDDGLKALLVSIGRDMEEVVALPGPDLALVADTG
RERYATTAAKLERARIQVAYSKACIRLDGFLAGHGVSSLPQEQQTAAGSLNTVMVAVMGV
SVKFRADLRRMFCEAPGRARLQAAFAHYFELSRSQAALRDRITETAAALDAADRALAALP
PDPAP