Protein Info for PS417_14585 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 39 to 62 (24 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 101 to 123 (23 residues), see Phobius details amino acids 130 to 150 (21 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 202 to 225 (24 residues), see Phobius details amino acids 237 to 256 (20 residues), see Phobius details amino acids 268 to 287 (20 residues), see Phobius details amino acids 293 to 312 (20 residues), see Phobius details amino acids 327 to 349 (23 residues), see Phobius details amino acids 357 to 379 (23 residues), see Phobius details PF07690: MFS_1" amino acids 10 to 322 (313 residues), 124.5 bits, see alignment E=4.8e-40 amino acids 207 to 378 (172 residues), 34.1 bits, see alignment E=1.5e-12 PF06779: MFS_4" amino acids 15 to 373 (359 residues), 27.6 bits, see alignment E=2e-10

Best Hits

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 88% identity to pmk:MDS_1569)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UFY3 at UniProt or InterPro

Protein Sequence (388 amino acids)

>PS417_14585 MFS transporter (Pseudomonas simiae WCS417)
MRINPPLVALAVGAFGIGVTEFAPMGMLPTIANDLGVSIPTAGLLVSAYALGVLLGAPLM
ILTTGKIPRRHLLVGLMAIFTLGNVMSALATGYYDLLIARVITSLNHGAFFGVGSIVAAS
VVAPDKRAGAVAAMFMGLTLATIGGVPLATWFGELLGWRTAFWGIGGLGLVTMVALWFAL
PNLPLPKSDGVLAEIKVLGRGSVLAALALTVVGSSAMFTVFTYIAPILSNETHASTPFIT
AMLVLFGVGLTLGNIWGGKAADRSIDRTLIVSLSALILVLLAFAFLMRWPIPAAVSILIW
GIASFAVVPPLQMRVMEAAKDAPNLASAVNIGAFNFGNAIGAAVGGAVINAGLGYPAISL
AGAAMAGLGLLMVVTFAWGARGRMAAAV