Protein Info for GFF2849 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 76 to 94 (19 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 131 to 153 (23 residues), see Phobius details amino acids 172 to 194 (23 residues), see Phobius details amino acids 214 to 231 (18 residues), see Phobius details amino acids 237 to 252 (16 residues), see Phobius details amino acids 259 to 278 (20 residues), see Phobius details amino acids 284 to 304 (21 residues), see Phobius details PF02518: HATPase_c" amino acids 442 to 530 (89 residues), 38 bits, see alignment E=9.7e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (536 amino acids)

>GFF2849 hypothetical protein (Sphingobium sp. HT1-2)
MATLSPISARPRPFRLEARAIDWRLVALLLAYPFAFKLAHMAASPWGGAHFFSLWYPAAG
VRLALLWRIGARFTPVLIVEECVIQLLTGTIMWGGPEFLNQLGGVARAPAAYGLMIALVR
FIERRSRSELAIAPMPFGLAAVLAPTLVSFTAGFREWLWPGVSGTLPSQPIATTIAAFLV
GDLLGVLLVAPPLLWIGTRNEEARRLMQIGRGRAVEAAAVFIFAWLLAWGLARVEPQIAV
TPVLIGAIWVGLRCGRLGAWIAIILSAAIILPWSAPLSASATRFALHMGLAAMAIATYLA
GSFAEAQIRAREDIARRDRILFQAERLKTLRAMSVAIIHEISQPLSTLAIETRHLSALSR
DPQPDLAEMRESIELVDRKAALLADMVRRLRSFGGRAVDEPSPIIVGQMLRDCAGMVGGE
ARSLGCAISLPPMDARLQVTGHEIELTQILLNLLRNAMLAAPGSTIEIAVESRADQVTIH
VANPVPSPTPDYGGMGIGLLVARAIADAHGGTLTRDIAQGRARASLSLPRTEPSHD