Protein Info for GFF2817 in Sphingobium sp. HT1-2

Annotation: Fucose permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 15 to 33 (19 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details amino acids 271 to 292 (22 residues), see Phobius details amino acids 303 to 322 (20 residues), see Phobius details amino acids 328 to 347 (20 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 384 to 405 (22 residues), see Phobius details TIGR00885: L-fucose:H+ symporter permease" amino acids 21 to 403 (383 residues), 347 bits, see alignment E=8.9e-108 PF07690: MFS_1" amino acids 26 to 349 (324 residues), 81.3 bits, see alignment E=3.3e-27

Best Hits

KEGG orthology group: K02429, MFS transporter, FHS family, L-fucose permease (inferred from 49% identity to bgl:bglu_1g17960)

Predicted SEED Role

"Fucose permease" in subsystem L-fucose utilization or L-fucose utilization temp

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>GFF2817 Fucose permease (Sphingobium sp. HT1-2)
MQADARVDRQEDSGATRMAVMLTIGLFFLWGLANNLNDVLIAHFRHAFALSDFASGLVQS
AFYLGYFCFAIPAALTAQRFGYKATVILGLLLFALGALLFLPASAAVSYPFFLFALFVIA
SGLAFLETAANPMVAVLGDAAGAARRLNLAQAFNPLGSITGVALGATLILSDAPAQGAAA
AAAVRLPYLLIALVVLAWAALLARTPFPKAAVEGHAVATSPLAGYRQLLRRPRYLAGVAA
QFFYVGAQVGIWSYLIRYAQAALPGITAQHAAWLLTLSLGLFMAGRFAGAALLSRFDGAR
LMRLFALVNLGLALVGCVWLGLPGVVALVAASFFMSIMYPTIFVLSLDGLGPLTKPGASM
IVMAIIGGAVLTALMGLISDMAGTINAAMAVPAFCFLLVAAYAHVMRGKGGVA