Protein Info for GFF2807 in Sphingobium sp. HT1-2

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 989 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF07715: Plug" amino acids 68 to 182 (115 residues), 60.7 bits, see alignment E=1.8e-20 PF00593: TonB_dep_Rec_b-barrel" amino acids 434 to 952 (519 residues), 112.5 bits, see alignment E=4.7e-36

Best Hits

KEGG orthology group: None (inferred from 65% identity to cak:Caul_2400)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (989 amino acids)

>GFF2807 TonB-dependent receptor (Sphingobium sp. HT1-2)
MNVQIAIHRHMAGVSLAAVAIMALAGTAHAQTEPAAEPAPQAQTSDAPAAQSADIIVTGS
RITTSGFNAPTPTTVIGEEQIANNAQPNIFNTIAQLPSLQGSTGAATGTFSTSSGQQGLS
SFSLRGLGAIRTLTLLDGQRVVGANVTGVPDISMFPQLLVKRVDVVTGGASASYGSDAVG
GVVNFITDTHFEGFKGNILGSITKYGDDETALVQAAYGKSFMDDRLHVVVSGEYDHEGGV
GAGDFGTDLAGSRNWYRATTLMNTGQTNNGLPQYNYRDYAQPYQYARYGLINNRPLQGIA
FDQNGNPYQFNYGSNGTPTGTGAVTNCYRGNSFCEGGDLSGAPGSGASLKSSLERINGYG
RIGYDFADNNEAYVTVNVAQVKTNNQPSPGYGRANLTVQCSNPYLPQLVRDRCATAGITS
FGFGSSNAAFPDPQVYTDRKQYRFVAGAKGKFGAAGTDWNYDAYYEHGITISDIRVKDIV
LQNRYAAAANAITLNGAIVCADPAARALGCQPINIFGGFTPSAAALAYVAPHDNGPFQHT
KLTQDVASLNFSGNPVELWAGPLSVAFGAEYRREFYRVNADPYGAGVSDLSPNSADYPAD
PLLNGAQGSNWAAGNYKNGRGKYEVYEGFVEIDMPLFDSEAVGRANLNAAGRGTHYSTSG
TVWAWKVGGTWDTPLDGIRLRAVTSRDVRAPNLSELFAAPTVTTLPNFSDPFQGAAVQAF
QNTIGNPNLKPEIARNTEIGIVLARPSWLPGLSLSFDYYDIKLKGVVSSLSAQQIVQFCY
DGNQAFCGGFSLDNANPSLNYINVQPFNLASWRTSGFDIEASYQWQQPLGLPGNFTVRAL
GTHIRKFIVEAGIAGVDPVDQAGANNGNTPDWKWLAVQTYDSGKFSLTVQERWISDGTFG
NQYVVCQSSCPTSTANHPTIDYNKMKGAFYVDIGATFKFSDRVSLYGKVDNLFDKDPVAS
PQTNTGLDINPALYDTLGRIYRAGVRFNF