Protein Info for GFF2806 in Variovorax sp. SCN45

Annotation: Predicted ATPase related to phosphate starvation-inducible protein PhoH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 PF13638: PIN_4" amino acids 136 to 289 (154 residues), 114.4 bits, see alignment E=7e-37 PF02562: PhoH" amino acids 386 to 585 (200 residues), 155.3 bits, see alignment E=2.3e-49

Best Hits

KEGG orthology group: K07175, PhoH-like ATPase (inferred from 90% identity to vpe:Varpa_2089)

Predicted SEED Role

"Predicted ATPase related to phosphate starvation-inducible protein PhoH" in subsystem Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (600 amino acids)

>GFF2806 Predicted ATPase related to phosphate starvation-inducible protein PhoH (Variovorax sp. SCN45)
MPLPPAPTKRAALLSPDALDAPARSSHRGSRRATEQRADEAPARTPQPLELFDSIGTEGA
GGAPATTRPTRRTKAKAVPAATPVTAPAPVSAPQPQALIQVETKAPVALAAAPVAPAPQA
PARPKRSKSTGPAKLFVLDTNVLLHDPMCLFRFEEHDIFLPMIVLEELDGHKKGTTEVAR
NGRQTSRTLDALAAAQDADIDKGLKLDTTGHREAGGRLFFQTAPLDYSLPVSLPQGKADN
QILGVVQALRDEYATDKPGKPKQEVVLVSKDINMRVKARALGLAAEDYQNDKTLDDGDLL
YAGSLALPPDFWTRQSKTVESWQSGSNTFYRISGPLVPNLYINQFVFFEAPGEPSMYARV
TEIRDKTAVLKTLKDYSSGKNAVWGVNTRNREQNFAMNLLMDPEIDFVTLTGTAGTGKTL
MALASGLTQVLDDRRYTEIIMTRATVSVGEDIGFLPGTEEEKMGPWMGALDDNLEFLAKG
DGGGAGEWGRAATNELIRSRIKVKSMNFMRGRTFLNKYVIIDEAQNLTPKQMKTLITRAG
PGTKIICMGNLAQIDTPYLTEGSSGLTFAVDKFKGWPHGGHITLARGERSRLADFASDVL