Protein Info for GFF2801 in Xanthobacter sp. DMC5

Annotation: Kynurenine formamidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 PF04199: Cyclase" amino acids 27 to 216 (190 residues), 105 bits, see alignment E=2e-34

Best Hits

KEGG orthology group: None (inferred from 50% identity to svi:Svir_18600)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (279 amino acids)

>GFF2801 Kynurenine formamidase (Xanthobacter sp. DMC5)
MNAVTPAPSRSFDFEDWLKAAQAARRIDLSHPMQKGMPIHPAHPPFHITLNNRHGDVLRS
CGHSSSNELMVTSTHSSTHIDALCHVSEHGALYGKYDAGREQQGTGLFKVHGAETIAPIF
RRGVLLDVARALGVDALDPAHEITVAELEAAEAASGTRVGEGDVVLVRTGWAAYWQDSPK
YLGLDSAGAPGPGVEGGRWLAARKPFSVGSDTSAFEVMNHHNITLEVHMILIAQNGIHII
ENLTLDELGAAGQGSFAFVAQPLRITGATGSPVRPLALL