Protein Info for PS417_14265 in Pseudomonas simiae WCS417

Annotation: phosphate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 transmembrane" amino acids 31 to 51 (21 residues), see Phobius details amino acids 85 to 110 (26 residues), see Phobius details amino acids 122 to 150 (29 residues), see Phobius details amino acids 175 to 199 (25 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details amino acids 260 to 279 (20 residues), see Phobius details amino acids 290 to 316 (27 residues), see Phobius details TIGR02138: phosphate ABC transporter, permease protein PstC" amino acids 26 to 314 (289 residues), 306.5 bits, see alignment E=8.2e-96 PF00528: BPD_transp_1" amino acids 106 to 319 (214 residues), 47.6 bits, see alignment E=8.4e-17

Best Hits

Swiss-Prot: 38% identical to PSTC_XYLFT: Phosphate transport system permease protein PstC (pstC) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: K02037, phosphate transport system permease protein (inferred from 99% identity to pfs:PFLU3317)

Predicted SEED Role

"Phosphate transport system permease protein PstC (TC 3.A.1.7.1)" in subsystem High affinity phosphate transporter and control of PHO regulon or Phosphate metabolism (TC 3.A.1.7.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7ULF2 at UniProt or InterPro

Protein Sequence (321 amino acids)

>PS417_14265 phosphate ABC transporter permease (Pseudomonas simiae WCS417)
MNTPFVVPVNPDSACQPPSTKDFLVDRTFRALARIGVVLVLALVFALVFEVGRKALPGME
KHGFDVLFGSVWDVNQGKYGILPAIWGTLYSAFIALLIAGFFGVSMAIFLTQDFLPAKLA
AVFRTIVELLAAIPSVVYGLWGIYVVIPAIRPLTAWLNTELGWIPFFGTSLSGPGLLPAA
LVLAIMILPTIAAVSQDALTGVPMKTKQAAYGMGTTHWEAILKVMVPSAATGIFGSLVLG
LGRALGETMALAMLVGNANNISLSLFAPANTLAALLALNFPEAGPNEIEVLMYAALVLMF
ITLLVNIIGSMIMVYAQRGTK