Protein Info for PS417_01420 in Pseudomonas simiae WCS417

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 transmembrane" amino acids 23 to 53 (31 residues), see Phobius details amino acids 61 to 84 (24 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 132 to 154 (23 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 228 to 252 (25 residues), see Phobius details amino acids 272 to 292 (21 residues), see Phobius details amino acids 330 to 351 (22 residues), see Phobius details amino acids 364 to 387 (24 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details amino acids 420 to 439 (20 residues), see Phobius details PF16933: PelG" amino acids 1 to 452 (452 residues), 498.2 bits, see alignment E=1.2e-153

Best Hits

KEGG orthology group: None (inferred from 83% identity to pfl:PFL_2978)

Predicted SEED Role

"Extracellular Matrix protein PelG"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3J3 at UniProt or InterPro

Protein Sequence (456 amino acids)

>PS417_01420 histidine kinase (Pseudomonas simiae WCS417)
MAGIGFELRKILSRDSYTATLHAYVYAGLISSGPWVLSIISVMLVGIISLGLLLPNSLVG
QFLVTVTYLMASSLILTGGLQLFFTRFVSDQLFEHNYEQILPNLLGILLMVTVGAGVLGI
IVLAVLFDQPLIYRVLVLSNFVVLCNLWLVIIFLSGMKKYNRILMVMVVGYSLMVASAYL
LSFLKMPGLLLALLIGHGSLLFLYLYDILREYRAEKMIAFDFLNRRNVFLSLLVTGFFYN
FGIWVDKILFWFNPGTSNSVIGPLRASILYDMPIFIAYLAIIPGMAVFLVRIETDFAEWY
DRLFRAIRDGETLQHIGSLKTEMTLSIRQGLLEICKVQGLTVVLLFLFAPRLLEWIGISS
YYLPLFYIDLIGVSIQVVFMALLNVFFYLDKRRVVLELCVLFAVLNAALTLLSMHLGPSF
FGYGFTLSLLVCVLLGLARLSSALEDLEYETFMLAR