Protein Info for GFF279 in Variovorax sp. SCN45

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 46 to 66 (21 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 99 to 120 (22 residues), see Phobius details amino acids 132 to 155 (24 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details amino acids 223 to 242 (20 residues), see Phobius details amino acids 262 to 283 (22 residues), see Phobius details amino acids 289 to 311 (23 residues), see Phobius details amino acids 323 to 343 (21 residues), see Phobius details amino acids 355 to 378 (24 residues), see Phobius details amino acids 399 to 419 (21 residues), see Phobius details amino acids 431 to 452 (22 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 404 (388 residues), 143.6 bits, see alignment E=3.7e-46

Best Hits

KEGG orthology group: None (inferred from 64% identity to bph:Bphy_1804)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (461 amino acids)

>GFF279 Uncharacterized MFS-type transporter (Variovorax sp. SCN45)
MPPRHRIVPLIVASPLFLQNLDTSVMATALPTIAKALDVSVLHLNLAITSYLLSLAVFLP
VSGWLAERFGPRRVFCVAVAFFSLGSTLCGAAQTLPQLVAFRVLQGLGGAMMLPVGRLIL
LRSVPPAQMVSAMVWFTVPPAFGRLAGPLFGGAIVTLASWRWIFLINIPFGLLAIAGALR
FINDLPEDSSPAPFDIEGFVLLAVGLTSLLGSLEMVGKSLLPVPAIWAMAGFGVLVSLVY
HLRSRNKAAPLIDLGILRFSTYRASIIGGTPLRIAIGASPFLLPLMLQLGFGLSPLASGS
LTMATALGSLATRTVMAKAIRTIGFRSLLVGATCLTSLFYVSYGHFRPSTPHVQIFVTLL
FGGLVNSMAMVSLQTLGFSQIPKPRMSHAATLNSMAQQLSLSLGVTLGATLVTLAAWWNG
SGADRLTAEDFSPAFGVVGAMTLLSLLSFTKLSKEEGAGLR