Protein Info for PS417_01415 in Pseudomonas simiae WCS417

Annotation: glycosyl transferase family 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 transmembrane" amino acids 30 to 49 (20 residues), see Phobius details PF11997: DUF3492" amino acids 10 to 288 (279 residues), 293.7 bits, see alignment E=3.5e-91 PF00534: Glycos_transf_1" amino acids 314 to 466 (153 residues), 76.1 bits, see alignment E=5.1e-25 PF13692: Glyco_trans_1_4" amino acids 315 to 464 (150 residues), 89.4 bits, see alignment E=5.7e-29

Best Hits

KEGG orthology group: None (inferred from 77% identity to pfl:PFL_2977)

Predicted SEED Role

"Extracellular matrix protein PelF, glycosyltransferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBD1 at UniProt or InterPro

Protein Sequence (504 amino acids)

>PS417_01415 glycosyl transferase family 1 (Pseudomonas simiae WCS417)
MNHKEPTPTADICLLLEGTWPYVRGGVSSWIHQMILGLPELTFSVMFIGGQRSAYTSRRY
EVPANVVHIEEVFLEDATHPADTRGKPRDADPQQLADLYRFLHHPDPPERELGERMLNCI
AEGHMTLDDVLRSRASWETLSEGYRQHCADPSFVNYFWTLRSLQSPLLMLAEASRKMPPA
RVLHSISTGYAGLLGCILKHRWKCTYLLSEHGIYTKERKIDLAQATWIAESSGQALNRSL
DGGSGYIRTLWVRYFERIGQLAYNSADKIIALYDGNRQRQIKDGADPSRTQLIANGIDLS
QWSRAMETREPGIAPVVGLIGRVVPIKDVKTFLRAMRGVISAMPNAEGWIVGPEEEDPEY
VSECRSLMASLGLEGKVHFLGFQRIQDILPKLGLMVLTSISEAQPLVILEAWAAGTPVIS
SDVGSCRELIEGGSAEDRDLGMAGKVVAIADPQATSAAILELLRSPARWKAAQAAGLLRV
NRYYTEALMLQRYRDLYQAAMENS