Protein Info for PS417_14155 in Pseudomonas simiae WCS417

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 231 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 45 to 65 (21 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 130 to 153 (24 residues), see Phobius details amino acids 163 to 182 (20 residues), see Phobius details amino acids 184 to 222 (39 residues), see Phobius details PF03591: AzlC" amino acids 19 to 157 (139 residues), 130.2 bits, see alignment E=3.8e-42

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU2963)

Predicted SEED Role

"Branched-chain amino acid transport protein AzlC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7ULC6 at UniProt or InterPro

Protein Sequence (231 amino acids)

>PS417_14155 branched-chain amino acid ABC transporter permease (Pseudomonas simiae WCS417)
MPTALPHYAFARGAIAVIPLSLACAPWGLLAGSMAIDAQFSPLQAQGLSAIVFAGAAQLV
AIGMVKSGASLISIVLTTLLLTSQHLLYGMHLRPVLSPLKTRWRMSLGFLLTDEFFALVS
HYDRETFNRWYALGVGLTFYIVWNLFTLAGIVLGKSIPGLDQLGLEFSIAATFIALITPV
VRDIPTVVCVAVSLLFSVWLSFLHWESAVVVSGLLGMSAGYACKRLGVGQQ