Protein Info for GFF2761 in Xanthobacter sp. DMC5

Annotation: Putative aliphatic sulfonates transport permease protein SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 68 to 88 (21 residues), see Phobius details amino acids 100 to 122 (23 residues), see Phobius details amino acids 128 to 150 (23 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 224 to 243 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 80 to 249 (170 residues), 82.6 bits, see alignment E=1.5e-27

Best Hits

KEGG orthology group: None (inferred from 42% identity to pao:Pat9b_4740)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>GFF2761 Putative aliphatic sulfonates transport permease protein SsuC (Xanthobacter sp. DMC5)
MTASPHSWRIRAVQFGAVALVAALWEFAPRLGLADPTLLPPFSEVLKQLITLLSEGSVMK
DLAITASEVALAFAIVAPLGVGCGLLLAENDYIGRVFKPFFYFLASVPKSVFLPAFILLF
GIGFGQKVAFGVFQAIFVLVISTVAAVASVEPELVKLARAYGASRARIYAEIYWPSMLPF
IVEGMRLGVIFSITGVVFAEMAVARAGMGARIATWGQTFQMPDLYAGVLLVSLLSITVNE
ALRAYERKVGKWRG