Protein Info for PS417_01405 in Pseudomonas simiae WCS417

Annotation: sugar transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 59 to 61 (3 residues), see Phobius details amino acids 63 to 84 (22 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details PF01590: GAF" amino acids 182 to 306 (125 residues), 27.6 bits, see alignment E=3.7e-10 PF16963: PelD_GGDEF" amino acids 323 to 443 (121 residues), 70 bits, see alignment E=1.8e-23

Best Hits

KEGG orthology group: None (inferred from 72% identity to pfl:PFL_2975)

Predicted SEED Role

"Extracellular Matrix protein PelD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U5J1 at UniProt or InterPro

Protein Sequence (455 amino acids)

>PS417_01405 sugar transporter (Pseudomonas simiae WCS417)
MNSPHMDYSLAPRASGPVSWLETLLVTGLAIGLGFWLTPEDPLQMHGGFPWPILAPLLLG
VRYGFVRGLFSAVLLVAALFALRYTGHEGYTQLEPSFIVGVLVCGMLVGEVRDLWVRRLE
RLQMANEYRQYRLDEFTRAHQILRVSHDLLEQRVAGSDQSLRSSLLGLREKLRGMPVEGD
ALSELAEPIVAMLGQYGALRVAGLYRVDESEKNVLPQALAMIGVMGPLETDDGLIKLCLE
RGELVSVRQELIDAGNAAQFSSLQACIPLIDAEGRLLAILAVRQMPFFAFQDRTLSLLSL
LAGHIADLLRRDSQVLRLPDADAQQFSLQLKRSLVDVEQHTLPAGLFAFEMTRVNDELTR
LMARSQRGLDLHLPVRNNRDHALLLVLLPLTSPEGTQGYLARIGLLLHEHFGIDTDLDSL
GVRVMPFNLEPGCDRNGLRNFLYNECGLNDQQVAV