Protein Info for GFF2755 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: UPF0225 protein YchJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 119 PF17775: UPF0225" amino acids 1 to 94 (94 residues), 102.2 bits, see alignment E=2.4e-33 PF02810: SEC-C" amino acids 101 to 119 (19 residues), 42.3 bits, see alignment 5.3e-15

Best Hits

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 99% identity to spq:SPAB_01486)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (119 amino acids)

>GFF2755 UPF0225 protein YchJ (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MRSRYCAFVMKDADYLIKSWHPTCNAAAFRDDIIAGFANTRWLGLTIFEHTWSEAENTGY
VSFIARFSEQGKNGAIIERSRFIKENGQWYYIDGTRPQLGRNDPCPCGSGKKFKKCCGQ