Protein Info for GFF2754 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1147 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 1018 to 1035 (18 residues), see Phobius details PF13555: AAA_29" amino acids 4 to 63 (60 residues), 46.3 bits, see alignment 4.2e-16 PF13558: SbcC_Walker_B" amino acids 980 to 1071 (92 residues), 71.8 bits, see alignment E=7.1e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1147 amino acids)

>GFF2754 hypothetical protein (Sphingobium sp. HT1-2)
MMQLAHIALVQWHLFGREDLAVGGDTAVLGQNRSGKSTLIDLIQAVMTGGSRRWYQFNRS
AGETGSRKSERTLRGYCLGQLNEHEFLRQESVTHIVLTFDDPDGVRPPVSVGLCVEASAI
EDAQVVGRYIAPGVRVDTDLLIEHLDGGQQRSAPWSLVRERLEQACAAAGTQLIRPDGPR
NHIREYMRQLFTGRRHSDPDRFIRAFVMALSFEDMRSVEGFVHNFLLARNDIDIGELREG
IQRYRDIQKDVHELERRLDALRALAELVSRFVTLLEREDVARGTARLAAMIEAGAALIAN
LRERRDTLAELDDIQQDIGRCDAEIAALGDRQDSLLAQSVAEGAAGKRAVVASELKAVDL
ARTGVVQRLEARFRAAALGASLLDHRERLAPLKLGALFQALEALRQHSDGLEPPTWPRDP
LAMEELIATARRSAIDSVAKIQERRDQAIAQRRGLQDELADLVARRDKARAGQVSLDDRT
IRLMAALERENMRPRTLCQVAEIVDPQWREAAEALLGRDREAILVDPEHASRAVEIVRAN
RDGFRGCRVINSRRLAEQPPGFDTDSLATVFASDDPLAIAFLRFRTGQVRLAGTQAELLA
GGRAIMRDGAYNSGIVVEVLRTRDLKIGRAAAPLMEAELLARIEDRQALIVVHAETERFH
DDIHRKLLPLMADVDPADRLDLLVAAIDQHEESRTELQHRLDKIAMTVDPAIQHNLDKVK
LQLRSATEEKEELIGRRGQLGQARIEIQRRLDAGDAQPGSWLCLRSRRALFKDRVRSSAS
LSILREAYRQQRGRALPRLVQEMTKRADEARDAYQALQGEIRETLGHYRADFDNSAPIAL
PGAIATEVKPWLAANIAALEENELIQYRRQADEAAEQIGQLFRTAFIHELNARFNDLRSE
LDNLTRALRMRPLHGEIYTLHARPKEEFAALHRLARESEHDELTFDALFGRAAPRDAEHA
QALAEVERLLSDESLDFSAYQDYRNYFTFDLRMEDVNKGRTTSYDKRKGTASGAERQVPY
YVVIGAALASIYHGARRQYERAELGLGLAVFDEAFSKMDGPNQRTLLEFYDDIGLQVVIA
APSEKRAVVYENLDSVIDVFRHGDNASAEAVRIKPHARTQMRAANPQHLDDAALAERLDL
FALDSAE