Protein Info for GFF2754 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: putative transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 30 to 51 (22 residues), see Phobius details amino acids 64 to 84 (21 residues), see Phobius details amino acids 96 to 114 (19 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 153 to 177 (25 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 235 to 259 (25 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details amino acids 295 to 315 (21 residues), see Phobius details amino acids 321 to 338 (18 residues), see Phobius details amino acids 359 to 381 (23 residues), see Phobius details amino acids 387 to 407 (21 residues), see Phobius details PF07690: MFS_1" amino acids 32 to 373 (342 residues), 152.9 bits, see alignment E=1.1e-48 amino acids 288 to 405 (118 residues), 42.5 bits, see alignment E=4.3e-15 PF00083: Sugar_tr" amino acids 64 to 200 (137 residues), 33 bits, see alignment E=3.2e-12

Best Hits

KEGG orthology group: None (inferred from 70% identity to pol:Bpro_4567)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>GFF2754 putative transport protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
LSTLSPSPANAAATPPDAARMTPAERRASASLALVFALRMLGLFIVLPVFALEAARLPGG
DDAARVGFAMGLYGLTQAFLQIPLGLASDRFGRKPVIVAGLLLFALGSGIAAWAPDLTWL
AIGRAVQGAGAISAAVTAFLADVTRDSVRTKAMAMVGASIALMFALSLVLAPVLAAWVGL
SGIFAITGVLALLAIAVVIWVAPPEPREHRPSDMRQLRTGLAEVLRHRGLLRLNLGVFVL
HAVQLAMWMAVPALLVAAGLPKADHGHIYLPAVAASLLVMGGVLFPMERRGRLRAAFLIA
IALIGAVQLALWALADAQPGLWTLGGLLFVFFIGFNTLEASQPSLVSRLAPAHARGAALG
VYNTLQSVGFFVGGAVGGWLAREHGAQGLFAACTVAMLVWLVVAWPMQAPASAGRR