Protein Info for GFF2737 in Variovorax sp. SCN45

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 transmembrane" amino acids 31 to 52 (22 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 83 to 108 (26 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 199 to 221 (23 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details amino acids 264 to 284 (21 residues), see Phobius details amino acids 290 to 316 (27 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details amino acids 354 to 373 (20 residues), see Phobius details PF07690: MFS_1" amino acids 6 to 298 (293 residues), 101.6 bits, see alignment E=2.3e-33 amino acids 202 to 371 (170 residues), 48.9 bits, see alignment E=2.3e-17

Best Hits

KEGG orthology group: None (inferred from 94% identity to vpe:Varpa_2184)

Predicted SEED Role

"Probable MFS transporter precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>GFF2737 Uncharacterized MFS-type transporter (Variovorax sp. SCN45)
MIVTLSMGIRHGFGLWLQPITQAQDWNRQTFSFALAIQNLSWGIFGVFAGMLADRFGAFR
VLIGGSVFYALGLFGMAHSPTPLLFTLSAGVLIGAAQAGSTYAVIYGVIGRQIPAERRSW
AMGVAAAAGSFGQFLMAPIEGRLIGHLGWQTALAVVAVLVLVIIPLAFGLREPKTEALAG
HRDQSVLQAVGEAFRYPSFGLLMAGYFVCGFQLAFIGIHMPTYLRDKSLPADVAGYALAL
IGLCNVFGTYTVGLLGQTLAKRKILAAIYFARAVSIALFLLAPISPMSVYVFSAAMGFLW
LSTVPATNAIVAGIFGVAHLSMLSGFVFLSHQVGSFLGVWLGGYLYDTTGSYDIVWYIAI
ALGVFAALINLPVKENAIARAPRPLGAAG