Protein Info for GFF2736 in Sphingobium sp. HT1-2

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 38 to 59 (22 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 95 to 119 (25 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 197 to 220 (24 residues), see Phobius details amino acids 232 to 253 (22 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details amino acids 290 to 308 (19 residues), see Phobius details amino acids 329 to 349 (21 residues), see Phobius details amino acids 355 to 372 (18 residues), see Phobius details PF07690: MFS_1" amino acids 11 to 259 (249 residues), 49.5 bits, see alignment E=1.6e-17 amino acids 206 to 383 (178 residues), 54 bits, see alignment E=6.6e-19

Best Hits

KEGG orthology group: None (inferred from 75% identity to sal:Sala_2954)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>GFF2736 Uncharacterized MFS-type transporter (Sphingobium sp. HT1-2)
MFAAIHPVRSLLLAIFMLMAGSGFLSTLIGLRLERAGAGTMAIGAVATAYFGGLVVGALR
AGAIVRQVGHIRAFAAFVSLLSASTLAYALVQYPLFWACLRLIDGICVAGVFICLESWLN
DRAEAETRGSVLAAYMVALYSGQAVGQLLLGASGALPAVPFQIASILISLAIIPLCLTRS
SAPAPVDAQAFTIRALYAASPLGTVGSVATGLMLGAFYGMAAVHVRRLGLDLGATASFMM
IVILGGVALQWPLGRLSDRLDRRRVIVGCFAATLAVCTALAMLVSGGPLLLALGALFGGL
SFALYPLCVAHCNDRLLATERVAASGRLVLLYSVGAAIGPLGAALLMSLAPTSGLFLFIA
LCAGATLAFGLWRQTATPPVPVPDQQDFQIVPRTTPVASLLDPNTVDGQTE