Protein Info for PS417_13940 in Pseudomonas simiae WCS417
Annotation: racemase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 56% identical to YGEA_ECO57: L-aspartate/glutamate-specific racemase (ygeA) from Escherichia coli O157:H7
KEGG orthology group: K01779, aspartate racemase [EC: 5.1.1.13] (inferred from 96% identity to pfs:PFLU3010)MetaCyc: 56% identical to amino acid racemase YgeA (Escherichia coli K-12 substr. MG1655)
5.1.1.-
Predicted SEED Role
"Aspartate racemase (EC 5.1.1.13)" in subsystem Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 5.1.1.13)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 5.1.1.13
Use Curated BLAST to search for 5.1.1.13
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1N7U1W1 at UniProt or InterPro
Protein Sequence (229 amino acids)
>PS417_13940 racemase (Pseudomonas simiae WCS417) MRTIGLIGGMSWESSAEYYRIINQRVRDQLGPLRSAQLLMYSVDFGPVEQAQHAGRWDDT ALILEDAARRLQAGGAECVVLCTNTMHLVAPRIEAAVSIPFLHIADAAGAAAVKAGTLTV GLLGTAFTMEQDFLKSRLTAQGLTVLVPEADERQAVHRIIYEELCVGVISDASRQVYQGV IESLAARGAQAIILGCTEISLLIKPEHSDLPLLDTTELHAQAAVAFALD