Protein Info for GFF2733 in Sphingobium sp. HT1-2

Annotation: Transcriptional regulator, GntR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 PF00392: GntR" amino acids 22 to 83 (62 residues), 47.9 bits, see alignment E=8.3e-17 PF07729: FCD" amino acids 112 to 230 (119 residues), 69.9 bits, see alignment E=2.8e-23

Best Hits

KEGG orthology group: None (inferred from 55% identity to mrd:Mrad2831_1327)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>GFF2733 Transcriptional regulator, GntR family (Sphingobium sp. HT1-2)
MTQADEHPLSRPASQPQRAVHDRIAHDLGIAIVGGRYQPGDILPGEERYSAEQGISRTAY
REAVRVLSAKGLVHSRTKSGTRINDRLRWNMLDLDVLAWMFEAGPTPEFLRDIFELRIVV
EPAAAQFAALRRDTQDISRMGHALEEMRRCGLQTMEGRAADQNFHRQILLATRNESLITL
ATSVTAVVAWTTRFARDERQESRDPMPDHDAVFDAIMRGDGEDARSKMLLLIGNASSDAG
ML