Protein Info for PS417_13915 in Pseudomonas simiae WCS417

Annotation: cell envelope protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF06863: DUF1254" amino acids 69 to 201 (133 residues), 142.5 bits, see alignment E=9.5e-46 PF06742: DUF1214" amino acids 339 to 449 (111 residues), 119.9 bits, see alignment E=7.7e-39

Best Hits

KEGG orthology group: None (inferred from 86% identity to pfs:PFLU3015)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U3W0 at UniProt or InterPro

Protein Sequence (466 amino acids)

>PS417_13915 cell envelope protein (Pseudomonas simiae WCS417)
MIGKPTRLLLASLSILMSNGVWADFTATPGEARAIAKEAYLYGYPVVEMYKTLYTQAVDQ
GGTRFKTPINRMGHSAQVPGPKDTSQFKPNPDTPYSFVWMDLRREPLVLTLPRIEDDRYY
SVQLIDLYSQNIAYLGTRSTGNNGGHYMVAGPDWKGQQPVDVDRVIYSESNLVYALYRTQ
LFDEKDVAKVKQIQNGYKVQPLSGYVKQPAPDKVAKIEWPKPTAAMTDSPQLFRYLNFML
AYAKPQDSEKDVLARFAKIGIAPGAPFKLSQLNAEQRKALEEGIADAKAEFAAFKKDRID
THQVTSGELHGSRDRLKNNYLYRYAGANLRLFGNSADEVAYMTYSVDSEGKPANGARHSY
TVHFAKDQLPPADAFWSLTIYDAKTGQLVPNHKKRYLINSRMLPDLKRDADGGLTLALQH
HEPPKAEQSNWLPAPPAPFYAVLRIYLPKPEVGNGQWKLPPLTPLK