Protein Info for PS417_13825 in Pseudomonas simiae WCS417

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details transmembrane" amino acids 68 to 84 (17 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 118 to 135 (18 residues), see Phobius details amino acids 141 to 159 (19 residues), see Phobius details amino acids 171 to 201 (31 residues), see Phobius details amino acids 207 to 230 (24 residues), see Phobius details amino acids 260 to 287 (28 residues), see Phobius details amino acids 299 to 317 (19 residues), see Phobius details amino acids 324 to 343 (20 residues), see Phobius details amino acids 349 to 373 (25 residues), see Phobius details amino acids 384 to 403 (20 residues), see Phobius details amino acids 409 to 429 (21 residues), see Phobius details PF02366: PMT" amino acids 40 to 222 (183 residues), 31 bits, see alignment E=2e-11 PF13231: PMT_2" amino acids 78 to 223 (146 residues), 29.8 bits, see alignment E=6.7e-11

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfs:PFLU3035)

Predicted SEED Role

"4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family" in subsystem Pterin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U9U5 at UniProt or InterPro

Protein Sequence (540 amino acids)

>PS417_13825 glycosyltransferase (Pseudomonas simiae WCS417)
MNTAQPSLLSPAIRRQSLGLGLLALLLFIAGNWHQAIIGFDSRFVLFAQEMLRHGPGFFP
TTYGQPYADYLATSTLMTWLVSLPFGEVTRFTAWLPTAIASALIVTLVYRLTAPYSQRWG
LLSIAMLLLSSSFISETRAVSLDQMLAAIALAVFYLGYAHDHFGAGKRLHWLYLLLIVGF
AVRGPIGLVVPTGVLCSYYLINRQWRPLFSFGLLALALLVACVGLLLLMAKLSGGERFMQ
DVIRMQFLGRMDGSEGSSGVLYYFTSSLGNYALAYPMAVLVLLAMVISGRRAPGPALQLV
WYCAAAGLLVMLGLSIPQAKKARYVLPMLPMAAMIAAYPFQVAHGRLFAWLRGLMLGIWT
LLPTLLIAGLLFARPRYPEHLSHLGWVYGVLGGLQGVALLALFKSQLRQVGPAFAAVLAV
WATYILVVEPLERSVYDTRTFTLQVHEQVMQQRAPVVLHGLGKDAKAIKYMVNLDCDQVP
LFTQQAAELKPIQAPAWLVMSQADYEGLQDPRFRSITPTLVGEFDRNPYVLLHLAKPPQP